GOTM related peer-reviewed publications

The list is sorted in inverse cronical order - i.e. the newest publications at the top.
The list is likely not complete since publications are only included if references are provided.

[1] S. Moghimi, J. Thomson, T. Özkan-Haller, L. Umlauf, and S. Zippel, “On the modeling of wave-enhanced turbulence nearshore,” Ocean Modelling, 2016. [ bib | DOI ]
[2] J. Bruggeman and K. Bolding, “A general framework for aquatic biogeochemical models,” Environmental Modelling and Software, 2014. [ bib | DOI ]
[3] M. McManus, E. Berdalet, J. Ryan, H. Yamazaki, J. Jaffe, O. Ross, H. Burchard, I. Jenkinson, and F. Chavez), eds., Global Ecology and Oceanography of Harmful Algal Blooms, GEOHAB Core Research Project: HABs in Stratified Environments. isbn: 1538 182x ed., 2013. [ bib ]
[4] E. Berdalet, M. A. McManus, O. N. Ross, H. Burchard, F. Chavez, J. S. Jaffe, I. Jenkinson, R. Kudela, I. Lips, A. Lucas, D. Rivas, M. C. R. de la Torre, J. Ryan, J. Sullivan, and H. Yamazaki, “Understanding harmful algae in stratified systems: Review of progress and identification of gaps in knowledge,” Deep-Sea Research II, vol. Published online, 2013. [ bib | DOI ]
[5] H. Burchard, H. Schuttelaars, and W. Geyer, “Residual sediment fluxes in weakly-to-periodically stratified estuaries and tidal inlets,” Journal of Physical Oceanography, vol. 43, pp. 1841-1861, 2013. [ bib | DOI ]
[6] J. Nauw and M. van der Vegt, “Hydrodynamics of the rhine rofi near ijmuiden,” in NCK-days 2012 : Crossing borders in coastal research : jubilee conference proceedings. (W. Kranenburg, E. Horstman, and K. Wijnberg, eds.), pp. 167-172, 2012. [ bib | http ]
[7] T. Karna, V. Legat, E. Deleersnijder, and H. Burchard, “Coupling of a discontinuous Galerkin finite element marine difference turbulence closure model,” Ocean Modelling, vol. 47, pp. 55-64, 2012. [ bib | DOI ]
[8] M. Bakhoday-Paskyabi, I. Fer, and A. D. Jenkins, “Surface gravity wave effects on the upper ocean boundary layer: Modification of a one-dimensional vertical mixing model,” Continental Shelf Research, vol. 38, pp. 63-78, 2012. [ bib | DOI ]
[9] J. van der Molen, J. N. Aldridge, C. Coughlan, E. R. Parker, D. Stephens, and P. Ruardij, “Modelling marine ecosystem response to climate change and trawling in the North Sea,” Biogeochemistry, 2012. [ bib | DOI ]
[10] N. Steiner, M. Robert, M. Arychuk, M. Levasseur, A. Merzouk, A. Pena, W. Richardson, and P. Tortell, “Evaluating dms measurements and model results in the northeast subarctic pacific from 1996-2010,” Biogeochemistry, vol. 110, no. 1-3, pp. 269-285, 2011. [ bib | DOI ]
[11] B. Schippmann and H. Burchard, “Rosenbrock methods in biogeochemical modelling - a comparison to Runge-Kutta methods and modified Patankar schemes,” Ocean Modelling, vol. 37, pp. 112-121, 2011. [ bib | DOI ]
[12] L. Umlauf and H. Burchard, “Diapycnal transport and mixing efficiency in stratified boundary layers near sloping topography,” Journal of Physical Oceanography, vol. 41, p. 329–345, 2011. [ bib | DOI ]
[13] E. V. Yakushev, I. S. Kuznetsov, O. I. Podymov, H. Burchard, T. Neumann, and F. Pollehne, “Modeling of influence of oxygenated inflows on biogeochemical structure of the Gotland Sea, central Baltic Sea: changes in distribution of manganese,” Computers and Geosciences, vol. 37, pp. 398-409, 2011. [ bib | DOI ]
[14] I. R. Jenkinson and J. Sun, “A model of pycnocline thickness modified by the rheological properties of phytoplankton exopolymeric substances,” Journal of Plankton Research, vol. 33, pp. 373-383, 2011. [ bib | DOI ]
[15] R. Somavilla Cabrillo, C. Gonzalez-Pola, M. Ruiz-Villarreal, and A. Lavin Montero, “Mixed layer depth (MLD) variability in the southern Bay of Biscay. Deepening of winter MLDs concurrent with generalized upper water warming trends?,” Ocean Dynamics, vol. 61, no. 9, pp. 1215-1235, 2011. [ bib | DOI ]
[16] S. Sonntag and I. Hense, “Phytoplankton behavior affects ocean mixed layer dynamics through biological-physical feedback mechanisms,” Geophysical Research Letters, vol. 38, no. L15610, 2011. [ bib | DOI ]
[17] H. Burchard and R. Hetland, “Quantifying the contributions of tidal straining and gravitational circulation to residual circulation in periodically stratified tidal estuaries,” Journal of Physical Oceanography, vol. 40, pp. 1243-1262, 2010. [ bib | DOI ]
[18] I. R. Jenkinson and J. Sun, “Rheological properties of natural waters with regard to plankton thin layers. A short review,” Journal of Marine Systems, vol. 83, pp. 287-297, 2010. [ bib | DOI ]
[19] S. Miladinova and A. Stips, “Sensitivity of oxygen dynamics in the water column of the baltic sea to external forcing,” Ocean Science, vol. 6, no. 2, pp. 461-474, 2010. [ bib | http ]
[20] I. Hense and H. Burchard, “Modelling cyanobacteria in shallow coastal seas,” Ecological Modelling, vol. 221, pp. 238-244, 2010. [ bib | DOI ]
[21] S. Falchetti, D. Conley, M. Brocchini, and S. Elgar, “Nearshore bar migration and sediment induced buoyancy effects,” Continental Shelf Research, vol. 30, pp. 226-238, 2010. [ bib | DOI ]
[22] J. Reissmann, H. Burchard, R. Feistel, E. Hagen, H. Lass, V. Mohrholz, G. Nausch, L. Umlauf, and G. Wieczorek, “State-of-the-art review on vertical mixing in the Baltic Sea and consequences for eutrophication,” Progress in Oceanography, vol. 82, pp. 47-80, 2009. [ bib | DOI ]
[23] E. Yakushev, S. Pakhomova, K. Sorensen, and J. Skei, “Importance of the different manganese species in the formation of water column redox zones: Observations and modelling,” Marine Chemistry, vol. 117, pp. 59-70, 2009. [ bib | DOI ]
[24] A. W. Omta, J. Bruggeman, S. A. L. M. Kooijman, and H. Dijkstra, “The organic carbon pump in the Atlantic,” Journal of Sea Research, vol. 62, pp. 179-187, 2009. [ bib | DOI ]
[25] J. van der Molen, K. Bolding, N. Greenword, and D. K. Mills, “A 1-d vertical multiple grain size model of suspended particulate matter in combined currents and waves in shelf seas,” Journal of Geophysical Research, vol. 114, p. F01030, 2009. [ bib | DOI ]
[26] Y. Ye, C. Volker, and D. A. Wolf-Gladrow, “A model of Fe speciation and biogeochemistry at the Tropical Eastern North Atlantic Time-Series Observatory site,” Biogeosciences, vol. 6, no. 10, pp. 2041-2061, 2009. [ bib | http ]
[27] H. Burchard, “Combined effects of wind, tide and horizontal density gradients on stratification in estuaries and coastal seas,” Journal of Physical Oceanography, vol. 39, pp. 2117-2136, 2009. [ bib | DOI ]
[28] F. I. Verspecht, H. Burchard, T. P. Rippeth, M. J. Howarth, , and J. H. Simpson, “Processes impacting on stratification in a region of freshwater influence: Application to Liverpool Bay,” Journal of Geophysical Research, vol. 114, p. 11022, 2009. [ bib | DOI ]
[29] I. Hense and B. Quack, “Modelling the vertical distribution of bromoform in the upper water column of the tropical Atlantic Ocean,” Biogeosciences, vol. 6, pp. 535-544, 2009. [ bib ]
[30] N. Steiner and K. Denman, “Parameter sensitivities in a 1-d model for dms and sulphur cycling in the upper ocean,” Deep Sea Research I, vol. 55, pp. 847-865, 2008. [ bib ]
[31] H. Burchard, P. Craig, J. Gemmrich, H. van Haren, P.-P. Mathieu, H. Meier, W. N. Smith, H. Prandke, T. Rippeth, E. Skyllingstad, W. Smyth, D. Welsh, and H. Wijesekera, “Observational and numerical modeling methods for quantifying coastal ocean turbulence and mixing,” Progress in Oceanography, vol. 76, pp. 399-442, 2008. [ bib | DOI ]
[32] I. Kuznetzov, T. Neumann, and H. Burchard, “Model study on the ecosystem impact of a variable C:N:P ratio for cyanobacteria in the Baltic Proper,” Ecological Modelling, vol. 219, pp. 107-114, 2008. [ bib | DOI ]
[33] H. Burchard and R. Hofmeister, “A dynamic equation for the potential energy anomaly for analysing mixing and stratification in estuaries and coastal seas,” Estuarine, Coastal and Shelf Science, vol. 77, pp. 679-687, 2008. [ bib | DOI ]
[34] H. Burchard, G. Flöser, J. V. Staneva, R. Riethmüller, and T. Badewien, “Impact of density gradients on net sediment transport into the Wadden Sea,” Journal of Physical Oceanography, vol. 38, pp. 566-587, 2008. [ bib | DOI ]
[35] D. Conley, S. Falchetti, I. Lohmann, and M. Brocchini, “The effects of flow stratification by non-cohesive sediment on transport in high-energy wave-driven flows,” Journal of Fluid Mechanics, vol. 610, pp. 43-67, 2008. [ bib | DOI ]
[36] N. L. Jones and S. G. Monismith, “The influence of whitecapping waves on the vertical structure of turbulence in a shallow estuarine embayment,” Journal of Physical Oceanography, vol. 38, pp. 1563-1580, 2008. [ bib ]
[37] N. L. Jones and S. G. Monismith, “Modeling the influence of wave-enhanced turbulence in a shallow tide- and wind-driven water column,” Journal of Geophysical Research, vol. 113, p. C03009, 2008. [ bib | DOI ]
[38] N. Steiner, S. Vagle, K. Denman, and C. McNeil, “Oxygen and nitrogen cycling in the Notheast Pacific - simulations and observations at station Papa in 2003/2004,” Journal of Marine Research, vol. 65, no. 3, pp. 441-469, 2007. [ bib ]
[39] S. Carniel, M. Vichi, and M. Sclavo, “Sensitivity of a coupled physical-biological model to turbulence: high frequency simulations in a northern Adiratic station.,” Chemistry and Ecology, vol. 23(2), pp. 157-175, 2007. [ bib ]
[40] J. Bruggeman and S. A. L. M. Kooijman, “A biodiversity-inspired approach to aquatic ecosystem modeling.,” Limnology and Oceanography, vol. 52(4), pp. 1533-1544, 2007. [ bib | DOI ]
[41] M. Maar, T. G. Nielsen, K. Bolding, H. Burchard, and A. W. Visser, “Grazing effects of blue mussel mytilus edulis on the pelagic food web under different turbulence conditions,” Marine Ecology Progress Series, vol. 339, pp. 199-213, 2007. [ bib ]
[42] L. Arneborg, V. Fiekas, L. Umlauf, and H. Burchard, “Gravity current dynamics and entrainment - A process study based on observations in the Arkona Basin,” Journal of Physical Oceanography, vol. 37, pp. 2094-2113, 2007. [ bib | DOI ]
[43] S. Vagle, C. McNeil, and N. Steiner, “Upper ocean bubble measurements from the NE Pacific and estimates of their role in air-sea gas transfer of nitrogen,” Journal of Geophysical Research, vol. 115, no. C12054,, 2006. [ bib | DOI ]
[44] N. Steiner, K. Denman, N. McFarlane, and L. Solheim, “Simulating the atmosphere-ocean physical conditions and effects on the planktonic ecosystem response during SERIES,” Deep Sea Research II, vol. 53, pp. 2434-2454, 2006. [ bib | DOI ]
[45] D. K. Ralston and M. T. Stacey, “Shear and turbulence production across subtidal channels,” Journal of Marine Systems, vol. 64, pp. 147-171, 2006. [ bib ]
[46] R. Torres, J. I. Allen, and F. G. Figueiras, “Sequential data assimilation in an upwelling influenced estuary,” Journal of Marine Systems, vol. 60, pp. 317-329, 2006. [ bib ]
[47] J. Allen, S. D. Archer, J. C. Blackford, F. J. Gilbert, and A. H. Taylor, “Changes in dms production and flux in relation to decadal shifts in ocean circulation,” Tellus B, vol. 58, pp. 242-254, 2006. [ bib ]
[48] H. Burchard, K. Bolding, W. Kühn, A. Meister, T. Neumann, and L. Umlauf, “Description of a flexible and extendable physical-biogeochemical model system for the water column,” Journal of Marine Systems, vol. 61, pp. 180-211, 2006. [ bib | DOI ]
[49] H. Burchard, H. Lass, V. Mohrholz, L. Umlauf, J. Sellschopp, V. Fiekas, K. Bolding, and L. Arneborg, “Dynamics of medium-intensity dense water plumes in the Arkona Sea, Western Baltic Sea,” Ocean Dynamics, vol. 55, pp. 391-402, 2005. [ bib | DOI ]
[50] A. Stips, H. Burchard, K. Bolding, H. Prandke, and A. Wüest, “Measurement and simulation of viscous dissipation rates in the wave affected surface layer,” Deep Sea Research II, vol. 52, pp. 1133-1155, 2005. [ bib | DOI ]
[51] L. Umlauf and H. Burchard, “Second-order turbulence closure models for gephysical boundary layers. A review of recent work,” Continental Shelf Research, vol. 25, pp. 795-827, 2005. [ bib | DOI ]
[52] L. Umlauf, “Modelling the effects of horizontal and vertical shear in stratified turbulent flows,” Deep Sea Research II, vol. 52, pp. 1181-1201, 2005. [ bib ]
[53] J. Allen, J. D. Siddorn, J. C. Blackford, and F. J. Gilbert, “Turbulence as a control on the microbial loop in a temperate seasonally stratified marine systems model,” Journal of Sea Research, vol. 52, pp. 1-20, 2004. [ bib ]
[54] S. D. Archer, F. J. Gilbert, J. Allen, J. C. Blackford, and P. D. Nightingale, “Modelling of the seasonal patterns of dimethyl sulphide production and fate during 1989 at a site in the North Sea,” Canadian Journal of Fisheries Research, vol. 61, pp. 765-787, 2004. [ bib ]
[55] J. C. Blackford, J. Allen, and F. J. G. J. Allen, “Ecosystem dynamics at six contrasting sites: a generic modelling study,” Journal of Marine Systems, vol. 52, pp. 191-215, 2004. [ bib ]
[56] L. Umlauf, H. Burchard, and K. Hutter, “Extending the k-ω turbulence model towards oceanic applications,” Ocean Modelling, vol. 5, pp. 195-218, 2003. [ bib | DOI ]
[57] L. Umlauf and H. Burchard, “A generic length-scale equation for geophysical turbulence models,” Journal of Marine Research, vol. 61, pp. 235-265, 2003. [ bib | DOI ]
[58] A. Stips, H. Burchard, K. Bolding, and W. Eifler, “Modelling of convective turbulence with a two-equation k-ε turbulence closure scheme,” Ocean Dynamics, vol. 52, pp. 153-168, 2002. [ bib | DOI ]
[59] H. Burchard, K. Bolding, T. P. Rippeth, A. Stips, J. H. Simpson, and J. Sündermann, “Microstructure of turbulence in the northern north sea: comparative study of observations and model simulations,” Journal of Sea Research, vol. 47, pp. 223-238, 2002. [ bib | DOI ]
[60] H. Burchard and K. Bolding, “Comparitive analysis of four second-moment turbulence closure for the oceanic mixed layer.,” Journal of Physical Oceanography, 2000. [ bib | DOI ]
[61] H. Burchard, A. Stips, W. Eifler, K. Bolding, and M. Villarreal, “Numerical simulation of dissipation measurements in non-stratified and strongly stratified estuaries.,” Interactions between Estuaries, Coastal Seas and Shelf Sea, pp. 1-18, 2000. [ bib ]

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